Makefile: update comment about top-level parallel Makefile

After the latest patches top-level parallel Makefile is working but
there is still an issue when a package has an unspecified optional
dependency so change the comment to explain that.

Signed-off-by: Fabio Porcedda <fabio.porcedda@gmail.com>
Signed-off-by: Peter Korsgaard <peter@korsgaard.com>